rs2170735 chr15:85500254 G>A

Sequence
ggaactgatactaggtgaaaaacc[G/A]gatttcaaccactgtagcctagtg
ASB in cell types
LNCaP (prostate carcinoma) VCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ERF_HUMAN GABPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.83 0.05 0.011.00 1.50 n/a No Hit
ERF_HUMAN 2.82 n/a 0.021.00 2.00 n/a No Hit
GABPA_HUMAN 1.74 -1.48 0.031.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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