rs2171462 chr17:43315919 A>C
- Sequence
gaaggcaaagatgctggattcgac[A/C]aatttttccagatctctgtttgtg
- ASB in cell types
- A549 (lung carcinoma) HeLa (cervical adenocarcinoma) GM12878 (female B-cells lymphoblastoid cell line) HeLa-LTR-Luciferase cells
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN ELL2_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.46 | 2.87 | 2.85 | n/a | No Hit | |||
| BCL3_HUMAN | -4.24 | 2.42 | 3.00 | n/a | n/a | |||
| ELL2_HUMAN | n/a | 3.55 | 3.00 | n/a | n/a | |||
| TBP_HUMAN | n/a | 3.21 | 1.50 | n/a | No Hit | |||
| T2FA_HUMAN | n/a | 3.81 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 12
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood