rs2172487 chr11:129608033 A>C

Sequence
ggcaatggcctccatagtttctta[A/C]gtaaccaattaacaagtcaagtca
ASB in cell types
MSC (mesenchymal stem cells)
ASB for transcription factors
CEBPB_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN -0.84 2.86 1.001.6·10-4 1.00 4.32 Concordant
Items per page:
1 – 1 of 1

Motif analysis

CEBPB_HUMAN Concordant
CEBPB_HUMAN pic

Genetic associations

GRASP ldl cholesterol,  total cholesterol
GTEx eQTL Esophagus_Mucosa

Download