rs220524 chr20:38649464 A>T

Sequence
ctgatccactaggtggctctagag[A/T]acaaatcacatcagagttgttgca
ASB in cell types
MS-1 (Small cell lung carcinoma) adrenal gland GM12892 (female B-cells lymphoblastoid cell line) foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.64 1.00 1.001.0·10-11 1.52 n/a No Hit
STAG1_HUMAN -0.71 0.94 1.002.3·10-5 1.10 n/a n/a
RAD21_HUMAN 0.26 0.82 1.003.6·10-3 1.21 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP abnormal involuntary movement scale,  bipolar disorder,  hdl cholesterol
GTEx eQTL Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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