rs221055 chr1:16206763 C>T
- Sequence
ctcccctcgcctctcgctcagcgg[C/T]ttgctgtcctcgcttccagacggc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- VEZF1_HUMAN RBM25_HUMAN E4F1_HUMAN ZBT40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| VEZF1_HUMAN | -3.24 | 1.80 | 1.50 | n/a | No Hit | |||
| RBM25_HUMAN | 1.82 | -3.17 | 2.00 | n/a | n/a | |||
| E4F1_HUMAN | -2.24 | 2.60 | 1.00 | n/a | No Hit | |||
| ZBT40_HUMAN | -2.24 | 2.50 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | -1.46 | 1.85 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood