ADASTRA v6.1.0
Search
Browse
Annotate
Help
Downloads
About
rs221988
chr3:64248631
A
>
C
Sequence
ccttgtcctttcatttgatatcat[A/C]tatttaaacaaaacaaaaccaaaa
ASB in cell types
iPS-derived chondrocytes
ASB for transcription factors
RARA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
Reset
hidden submit
Filter
Get TSV
Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN
-0.82
1.53
1.00
1.6·10
-5
1.00
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
EMBL-EBI
smoking initiation (ever regular vs never regular)
,
smoking initiation (ever regular vs never regular) (mtag)
GTEx eQTL
Thyroid
Download
Download page in JSON
Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
Please enable JavaScript to continue using this application.
Switch release
SNP set annotation with ANANASTRA
Sort
+/-100bp
log2-scale
log2(Alt/Ref motif p-value)