rs2232812 chr1:171781417 T>C
- Sequence
ccacagcacagccgcgctcactcc[T/C]cacccggacgtgacctagttctca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) fetal bone marrow-derived mononuclear cells 22RV1 (prostate carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- ANDR_HUMAN TCF21_HUMAN RFX5_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.69 | -4.33 | 2.00 | n/a | No Hit | |||
| TCF21_HUMAN | 2.06 | n/a | 2.50 | n/a | No Hit | |||
| RFX5_HUMAN | -1.51 | 2.14 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Testis, Thyroid, Whole_Blood