rs2238001 chr11:61757035 T>C

Sequence
gaactgggagcagaaattattaac[T/C]gaatcattaactgggtggccccgc
ASB for transcription factors
MIXL1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MIXL1_HUMAN 2.74 n/a 0.011.00 1.00 0.66 Weak Discordant
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Motif analysis

MIXL1_HUMAN Weak Discordant
MIXL1_HUMAN pic

Genetic associations

GRASP coronary artery disease (cad),  hdl cholesterol change with statins,  parkinsons disease
GTEx eQTL Brain_Cortex,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Nerve_Tibial,  Pancreas,  Testis,  Whole_Blood

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