rs2241111 chr1:156193927 T>C
- Sequence
ggcataacgaaggtaaagaaggcg[T/C]ggctactgcccaaatccaagatgg
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- NRF1_HUMAN TYY1_HUMAN NFYA_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 1.47 | -0.48 | 2.71 | n/a | No Hit | |||
| TYY1_HUMAN | 2.20 | 0.32 | 1.43 | 0.53 | Weak Discordant | |||
| NFYA_HUMAN | 2.60 | n/a | 2.00 | n/a | No Hit | |||
| SP1_HUMAN | 1.68 | n/a | 2.00 | -1.89 | Weak Concordant | |||
| NFYB_HUMAN | 2.46 | -1.50 | 2.00 | n/a | No Hit |
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Motif analysis
