rs224183 chr16:3184217 C>T
- Sequence
gaccaacgagccgccgcttcccct[C/T]tgttttgttgttgttgttgttgtt
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXK2_HUMAN IKZF2_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -0.13 | 1.31 | 1.83 | n/a | No Hit | |||
| IKZF2_HUMAN | 0.29 | 2.06 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 0.16 | 1.38 | 1.67 | 0.87 | Weak Concordant |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Frontal_Cortex_BA9, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood