rs2242091 chr8:143541675 G>A
- Sequence
aacggctgggaagggactgcttgg[G/A]ctctgggaggccgcgcgggcccag
- ASB in cell types
- adult erythroblasts primary B-CLL cells 22RV1 (prostate carcinoma) monocytes from periferal blood
- ASB for transcription factors
- HCFC1_HUMAN MEN1_HUMAN RFX2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 1.79 | -0.20 | 2.00 | n/a | n/a | |||
| MEN1_HUMAN | 2.98 | -5.32 | 2.00 | n/a | n/a | |||
| RFX2_HUMAN | n/a | 2.19 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.04 | -4.71 | 2.00 | 0.98 | Weak Discordant | |||
| NELFE_HUMAN | 1.36 | -3.08 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood