rs2248933 chr10:43420579 G>T
- Sequence
cccttccagcgctgccggcggcgg[G/T]gcgggtgccgggcgcgcctgctgc
- ASB in cell types
- HCT-116 (colon carcinoma) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ZFX_HUMAN LDB1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 2.90 | -2.34 | 1.00 | n/a | No Hit | |||
| LDB1_HUMAN | -0.59 | 2.41 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.74 | 0.60 | 1.08 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid