rs226249 chr1:7961718 T>C
- Sequence
cgcgtgcgtgctggcgtgcgttca[T/C]tttcagcctggtgtggggtgagtg
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) fetal bone marrow-derived mononuclear cells MOLT-4 (Adult T acute lymphoblastic leukemia) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- KMT2A_HUMAN NRF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | 2.81 | 0.56 | 1.28 | n/a | No Hit | |||
| NRF1_HUMAN | 1.38 | 0.20 | 1.58 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood