rs226439 chr17:35709671 A>G
- Sequence
ttccgcttccaaatttgcagtgta[A/G]ataatttttataattatttcatga
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.67 | -0.20 | 2.00 | -5.82 | Concordant |
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Motif analysis
Genetic associations
GRASP alzheimers disease, hdl cholesterol change with statins, neuroblastoma (brain cancer), parkinsons disease, resistance to kuru in aged women despite likely exposure
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Hypothalamus, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Whole_Blood