rs2268676 chr5:37371287 G>A
- Sequence
attagggtaggttatttagggaag[G/A]gagggagggaaaggaagggaagga
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) HEK293-A
- ASB for transcription factors
- LCORL_HUMAN GABP1_HUMAN MEF2B_HUMAN EP400_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LCORL_HUMAN | -3.91 | 4.29 | 1.00 | n/a | n/a | |||
| GABP1_HUMAN | -2.23 | 0.66 | 1.17 | n/a | n/a | |||
| MEF2B_HUMAN | -0.08 | 1.23 | 1.50 | n/a | No Hit | |||
| EP400_HUMAN | -0.65 | 0.65 | 1.00 | n/a | n/a | |||
| REQU_HUMAN | -0.32 | 2.24 | 1.33 | n/a | n/a |
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Motif analysis
