rs226898 chr16:19609540 C>T

Sequence
gcccttagtggcttaggtccatgc[C/T]actcaatttatcacaatgttttga
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CREB1_HUMAN 2.15 n/a 3.2·10-61.00 2.00 n/a No Hit
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP bipolar disorder in alcoholics,  hdl cholesterol,  hypertension,  infant head circumference,  lymphocyte count,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Cells_Cultured_fibroblasts

Download