rs227950 chr7:23570821 A>G
- Sequence
ccagttatgctgtgactctcttcc[A/G]gcctcctagatacccagcccagat
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) HepG2 (hepatoblastoma) WA09 (embryonic stem cells)
- ASB for transcription factors
- ELF1_HUMAN E4F1_HUMAN ETS1_HUMAN ELF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | n/a | 2.60 | 2.50 | 6.26 | Concordant | |||
| E4F1_HUMAN | n/a | 3.77 | 2.00 | 4.87 | Concordant | |||
| ETS1_HUMAN | n/a | 3.14 | 1.00 | 4.79 | Concordant | |||
| ELF4_HUMAN | -1.83 | 2.78 | 2.00 | 4.89 | Concordant |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid