rs2279908 chr3:44729636 C>T
- Sequence
ccggctgggcgcgtccgggactta[C/T]tcctttccgcagggcagcacccag
- ASB in cell types
- BEAS-2B (bronchial epithelium) GM12892 (female B-cells lymphoblastoid cell line) neural cell HepG2 (hepatoblastoma)
- ASB for transcription factors
- GCR_HUMAN EP300_HUMAN TYY1_HUMAN ZNF12_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.27 | 0.56 | 1.00 | n/a | No Hit | |||
| EP300_HUMAN | 2.32 | 1.03 | 1.25 | n/a | n/a | |||
| TYY1_HUMAN | 0.16 | 1.35 | 1.64 | n/a | No Hit | |||
| ZNF12_HUMAN | -1.41 | 2.16 | 2.00 | 1.11 | Weak Concordant | |||
| TZAP_HUMAN | 2.39 | -2.06 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood