rs2281825 chr14:103333977 A>C

Sequence
cagggccactccgggtctcgcgag[A/C]cccaagggctgcgccgcgaagacc
ASB in cell types
WA01 (H1, human embryonic stem cells) liver HepG2 (hepatoblastoma) CD14+ monocytes
ASB for transcription factors
KAISO_HUMAN TYY1_HUMAN STAT1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KAISO_HUMAN 3.16 -2.86 2.2·10-71.00 1.00 -2.57 Concordant
TYY1_HUMAN 3.02 0.13 3.9·10-61.00 1.50 n/a No Hit
STAT1_HUMAN 3.48 n/a 1.0·10-51.00 2.00 n/a No Hit
CTCF_HUMAN 0.72 0.61 9.7·10-51.00 1.12 n/a No Hit
INT11_HUMAN -3.42 1.25 1.003.5·10-3 2.00 n/a n/a
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Motif analysis

KAISO_HUMAN Concordant
KAISO_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Heart_Atrial_Appendage,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid,  Whole_Blood

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