rs2287555 chr12:108562657 C>T
- Sequence
ctggggctttccgtctgaggcggg[C/T]ggcatcggctctgctgctgcggag
- ASB in cell types
- HepG2 (hepatoblastoma) SEM (childhood B acute lymphoblastic leukemia) Th1-cells HBEC (Human bronchial epithelial cells)
- ASB for transcription factors
- TBX21_HUMAN INT12_HUMAN HEY1_HUMAN INT13_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | 2.19 | 0.24 | 1.00 | n/a | No Hit | |||
| INT12_HUMAN | -2.06 | 1.96 | 1.50 | n/a | n/a | |||
| HEY1_HUMAN | 2.27 | n/a | 1.00 | n/a | No Hit | |||
| INT13_HUMAN | -0.64 | 1.41 | 1.50 | n/a | n/a | |||
| KAT8_HUMAN | -2.41 | 2.65 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Caudate_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Spleen, Testis, Whole_Blood