rs228878 chr17:66509662 G>A

Sequence
cattgtgtaaacacccagaataac[G/A]tatgaccaaatgtctgggcacctg
ASB for transcription factors
TCF21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 1.53 -4.12 0.041.00 2.00 3.14 Discordant
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Motif analysis

TCF21_HUMAN Discordant
TCF21_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  height,  ldl cholesterol,  obesity with early age of onset (age >2)
GTEx eQTL Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis

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