rs2291583 chr10:25016442 G>A
- Sequence
cacccaataaggtttttgtgagca[G/A]gccccaatcgcggtgtgggcggag
- ASB in cell types
- HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) U87 (glioblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ANDR_HUMAN BRD3_HUMAN USF1_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.33 | -0.04 | 1.67 | n/a | No Hit | |||
| BRD3_HUMAN | 2.38 | n/a | 1.00 | n/a | n/a | |||
| USF1_HUMAN | 2.23 | n/a | 1.50 | n/a | No Hit | |||
| ZFX_HUMAN | 2.54 | -2.58 | 1.00 | -5.54 | Concordant | |||
| RBM25_HUMAN | 1.67 | n/a | 5.00 | n/a | n/a |
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Motif analysis
