rs2297977 chr1:42949617 G>T

Sequence
cagacacccctggttgccctcgag[G/T]cagaaggcactcgccagtcttcaa
ASB in cell types
K562 (myelogenous leukemia) HKC8 (kidney proximal tubule cell line)
ASB for transcription factors
NFIC_HUMAN KDM1A_HUMAN NCOR1_HUMAN MNT_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFIC_HUMAN n/a 2.45 1.004.2·10-14 3.00 -0.16 Weak Discordant
KDM1A_HUMAN n/a 4.30 1.007.0·10-9 2.00 n/a n/a
NCOR1_HUMAN -3.79 3.47 1.002.2·10-5 1.00 n/a n/a
MNT_HUMAN -1.79 2.15 1.003.7·10-4 1.00 n/a No Hit
MTA2_HUMAN -1.73 2.52 1.001.2·10-3 1.00 n/a n/a
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Motif analysis

NFIC_HUMAN Weak Discordant
NFIC_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  acute lung injury following major trauma,  fasting blood glucose,  rheumatoid arthritis
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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