rs2305132 chr2:113199364 T>A
- Sequence
gcttgcgtgcgggcggggcccgcg[T/A]gcgccgtctgcaaaggggcggggg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) GM19099 (female B-cells Lymphoblastoid Cell Lines) breast tumor HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN BMAL1_HUMAN MYCN_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.24 | 0.54 | 1.31 | n/a | No Hit | |||
| STAG1_HUMAN | 2.71 | 0.44 | 1.07 | n/a | n/a | |||
| BMAL1_HUMAN | 2.17 | -1.09 | 2.00 | -4.27 | Concordant | |||
| MYCN_HUMAN | 1.59 | 0.71 | 1.00 | -2.97 | Concordant |
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Motif analysis
