rs2306170 chr7:149028658 C>T
- Sequence
ccgccgccctaggccctccctact[C/T]ctgcgcgcggccctcggctgcgcg
- ASB in cell types
- HCT-116 (colon carcinoma) 22RV1 (prostate carcinoma) VCaP (prostate carcinoma) Th1-cells
- ASB for transcription factors
- MAX_HUMAN SRBP2_HUMAN UBP22_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 2.02 | -0.04 | 1.23 | n/a | No Hit | |||
| SRBP2_HUMAN | -1.17 | 1.84 | 2.33 | n/a | No Hit | |||
| UBP22_HUMAN | 1.92 | -1.56 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | -0.91 | 2.94 | 2.40 | n/a | No Hit | |||
| TBP_HUMAN | -0.10 | 0.84 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood