ADASTRA v6.1.0
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rs231981
chr3:172520708
A
>
G
Sequence
acatgctagacccagaggtatact[A/G]atgagcagaagcagacacagctct
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
MTA2_HUMAN
IKZF2_HUMAN
FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTA2_HUMAN
2.63
-2.29
4.5·10
-3
1.00
1.00
n/a
n/a
IKZF2_HUMAN
1.63
-0.66
0.05
1.00
1.00
n/a
n/a
FOXK2_HUMAN
n/a
2.19
1.00
0.05
1.00
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration (geographic atrophy)
,
infant head circumference
,
ldl cholesterol
,
triglycerides
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)