rs235029 chr20:49630591 A>G

Sequence
taacacttattttccagcaagcac[A/G]tattcacgttacttttagaataga
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) germinal center B-cells
ASB for transcription factors
RELB_HUMAN RAD51_HUMAN IKZF2_HUMAN ELF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RELB_HUMAN -2.61 3.01 1.005.0·10-5 1.00 n/a No Hit
RAD51_HUMAN -2.34 2.72 1.002.0·10-3 1.00 n/a n/a
IKZF2_HUMAN -0.98 1.23 1.002.8·10-3 1.00 n/a n/a
ELF1_HUMAN -1.86 2.24 1.009.1·10-3 1.25 n/a No Hit
ZN687_HUMAN -1.72 2.05 1.000.02 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin,  homa-b,  homa-ir,  parkinsons disease,  total cholesterol
GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes

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