rs2351313 chr6:154606749 C>T

Sequence
gctagtgatcatgacaaagcctga[C/T]gtgcagggactttccctcgtctga
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) activated primary CD4+ T cells from blood
ASB for transcription factors
NFKB1_HUMAN COT1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFKB1_HUMAN 2.03 -0.17 2.0·10-31.00 1.38 n/a No Hit
COT1_HUMAN 2.30 -1.98 0.031.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP longstanding arthritis,  rheumatoid arthritis,  schizophrenia,  triglycerides change with statins
GTEx eQTL Esophagus_Mucosa,  Nerve_Tibial

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