rs2352214 chr15:90162097 T>C

Sequence
caggggtaagccactgcactcagc[T/C]taggaaatgaaacttcaaacccag
ASB in cell types
foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.94 0.37 8.2·10-41.00 1.47 n/a No Hit
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP alzheimers disease,  microalbuminuria,  systolic blood pressure (sbp),  urinary albumin-to-creatinine ratio,  waist hip ratio
GTEx eQTL Esophagus_Mucosa,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

Download