rs2353005 chr19:49869505 G>A
- Sequence
aaaagcggacggtgactatgtaga[G/A]actggtcaagccctttacaggatt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) monocytes from periferal blood CD14+ monocytes breast tumor
- ASB for transcription factors
- FOXK2_HUMAN STAT1_HUMAN SRBP2_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.06 | 0.79 | 1.25 | n/a | No Hit | |||
| STAT1_HUMAN | 2.15 | -0.54 | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 2.87 | 0.24 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.12 | n/a | 2.00 | n/a | No Hit | |||
| RBM25_HUMAN | 1.71 | 1.04 | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood