rs235304 chr21:44878326 G>A

Sequence
gctgcgagctggaatgtgcctgtg[G/A]gcaggtccagcacaaatatcctgg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes
ASB for transcription factors
SPI1_HUMAN IKZF2_HUMAN FOXK2_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.16 0.45 0.011.00 1.56 n/a No Hit
IKZF2_HUMAN 1.81 -1.26 0.011.00 1.00 n/a n/a
FOXK2_HUMAN n/a 2.30 1.000.03 1.00 n/a No Hit
STAT1_HUMAN 2.13 n/a 0.041.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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