rs235373 chr21:44873777 T>C
- Sequence
agctcgccccgctccctcgccatc[T/C]gccccgcccctcgccaacgggctc
- ASB in cell types
- thymus-derived CD34- cells HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN BC11B_HUMAN TYY1_HUMAN ZBT40_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 1.36 | -0.17 | 1.00 | n/a | n/a | |||
| BC11B_HUMAN | n/a | 2.48 | 2.00 | n/a | n/a | |||
| TYY1_HUMAN | 2.50 | 0.19 | 1.75 | -1.43 | Weak Concordant | |||
| ZBT40_HUMAN | 2.39 | -2.06 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis