rs235374 chr21:44875071 G>C

Sequence
cccgcggagcggccttggttcacc[G/C]gaccgcctgggaacctggccgggg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
FOXK2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 2.06 n/a 0.041.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI high density lipoprotein cholesterol levels
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Cells_Cultured_fibroblasts Esophagus_Mucosa Esophagus_Muscularis Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Pancreas Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Thyroid Whole_Blood

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