rs2356811 chr5:23727424 A>G
- Sequence
taagcggttgacgtgtcccaacct[A/G]tttgcatatctcatatcagaagcc
- ASB in cell types
- 22RV1 (prostate carcinoma) CWR22 (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) primary prostate cancer
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.48 | 2.46 | 1.69 | 2.56 | Concordant | |||
| FOXA1_HUMAN | -0.21 | 1.95 | 1.50 | 1.54 | Weak Concordant | |||
| CREB1_HUMAN | -0.51 | 2.63 | 3.00 | n/a | No Hit |
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Motif analysis
