rs2357411 chr2:172462191 A>G
- Sequence
tgccaccttatcgcggtgggtccc[A/G]ggagaccgggcgcaactggagcag
- ASB in cell types
- A549 (lung carcinoma) CD34+ hematopoietic stem cells-derived proerythroblasts 2588 (Lymphoblastoid Cell Lines) neural cell
- ASB for transcription factors
- RAD21_HUMAN GATA1_HUMAN STAG1_HUMAN ZEB2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.21 | 0.56 | 1.76 | n/a | n/a | |||
| GATA1_HUMAN | n/a | 2.70 | 3.50 | n/a | No Hit | |||
| STAG1_HUMAN | -0.17 | 0.71 | 1.11 | n/a | n/a | |||
| ZEB2_HUMAN | -1.91 | 2.30 | 1.00 | -4.55 | Discordant |
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Motif analysis
