rs2358580 chr19:10252206 G>A
- Sequence
tgacgtcatccagcggcgcctcgc[G/A]aggctccagtggccttgacctccc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) esophagus squamous epithelium
- ASB for transcription factors
- RBM25_HUMAN CREM_HUMAN TYY1_HUMAN CHD2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 0.10 | 2.82 | 2.00 | n/a | n/a | |||
| CREM_HUMAN | -2.64 | 2.99 | 1.00 | n/a | No Hit | |||
| TYY1_HUMAN | -0.35 | 2.24 | 1.75 | n/a | No Hit | |||
| CHD2_HUMAN | 2.82 | n/a | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.13 | 0.25 | 1.07 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Liver, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Whole_Blood