rs2358747 chr5:176578476 C>T
- Sequence
ctacctgacgctgcaggccacaga[C/T]ggcgggaacctgtcctcctccacc
- ASB in cell types
- LNCaP (prostate carcinoma) A549 (lung carcinoma) GM02255 (Lymphoblastoid Cell Lines) GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- E2F1_HUMAN KAISO_HUMAN RB_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | -1.65 | 2.29 | 1.00 | 2.54 | Concordant | |||
| KAISO_HUMAN | 3.47 | -3.35 | 1.00 | 0.90 | Weak Discordant | |||
| RB_HUMAN | n/a | 3.07 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | 1.30 | 0.19 | 2.00 | n/a | n/a |
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Motif analysis
