rs2360240 chr8:52832270 A>T
- Sequence
gctattccctttgcagttctatat[A/T]tatttaagaattagctcatccagt
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) LN95(Prostate adenocarcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN TBP_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.85 | 3.17 | 1.63 | 5.64 | Concordant | |||
| ANDR_HUMAN | -0.51 | 2.58 | 1.52 | 2.17 | Concordant | |||
| TBP_HUMAN | -0.54 | 1.44 | 1.33 | -1.51 | Weak Discordant | |||
| HXB13_HUMAN | -0.47 | 2.27 | 1.50 | n/a | No Hit |
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Motif analysis
