rs236326 chr1:93592163 T>A
- Sequence
agtatttgtttttggttacacagg[T/A]gcttccgcccatgtggcctcggag
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) HEK293T (embryonic kidney)
- ASB for transcription factors
- FLI1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FLI1_HUMAN | 2.17 | -1.92 | 1.00 | -0.49 | Weak Concordant | |||
| IKZF2_HUMAN | 1.57 | -1.07 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood