rs2366775 chr5:90644219 G>C

Sequence
tttgataccatttaagcatatgca[G/C]tgcaactcaaacactcaagaatga
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
SPT5H_HUMAN AFF1_HUMAN NELFA_HUMAN COT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPT5H_HUMAN n/a 2.28 1.002.4·10-5 2.00 n/a n/a
AFF1_HUMAN -5.04 3.13 1.002.4·10-4 2.00 n/a n/a
NELFA_HUMAN -1.79 2.76 1.009.6·10-4 2.00 n/a n/a
COT1_HUMAN -5.54 3.21 1.002.9·10-3 2.00 n/a No Hit
GABP1_HUMAN -1.66 2.61 1.000.03 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP total cholesterol change with statins,  triglycerides change with statins
GTEx eQTL Artery_Tibial,  Colon_Transverse,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Pancreas,  Stomach,  Testis,  Whole_Blood

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