rs2369668 chr12:1080836 T>A
- Sequence
ctgaggcttccttagccacgtgga[T/A]ctgtaagtccaattaaacctcttt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN ELF1_HUMAN ARNT_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.56 | -2.59 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 2.83 | -2.70 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | 2.90 | -2.88 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | 2.17 | -2.16 | 1.00 | n/a | No Hit | |||
| RELB_HUMAN | 2.38 | -2.07 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis