rs236971 chr6:16586445 T>C
- Sequence
aactcagttaagacatgatgtcag[T/C]gatggccaaggtcatcacgaacat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes
- ASB for transcription factors
- STAT1_HUMAN ZN687_HUMAN ARNT_HUMAN ZN217_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.62 | -4.84 | 2.00 | n/a | No Hit | |||
| ZN687_HUMAN | -2.12 | 2.50 | 1.00 | n/a | n/a | |||
| ARNT_HUMAN | -2.02 | 2.42 | 1.00 | n/a | No Hit | |||
| ZN217_HUMAN | -2.02 | 2.46 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), asthma, height, primary rhegmatogenous retinal detachment, tetrology of fallot