rs2373926 chr7:151039295 G>A

Sequence
tccttcctgcctggtgcctccccc[G/A]gctgcctttagcaagtgctgactg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
EGR1_HUMAN KDM1A_HUMAN IKZF1_HUMAN NR2C1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR1_HUMAN 1.41 -0.63 1.6·10-31.00 1.20 n/a No Hit
KDM1A_HUMAN 1.80 -1.39 2.2·10-31.00 1.25 n/a n/a
IKZF1_HUMAN 1.50 -0.45 2.3·10-31.00 1.38 n/a n/a
NR2C1_HUMAN 2.89 -0.22 8.3·10-30.81 1.75 n/a No Hit
HDAC1_HUMAN 1.29 -2.28 0.021.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP variant creutzfeldt-jakob disease
GTEx eQTL Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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