rs2374270 chr7:151705704 C>A
- Sequence
tgttcgattggagggtgctctgct[C/A]ttcaaattaatttcagtctccctg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) A549 (lung carcinoma) HEK293 (embryonic kidney) pancreas
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.47 | 1.02 | 1.49 | n/a | No Hit | |||
| RAD21_HUMAN | -0.05 | 0.97 | 1.78 | n/a | n/a | |||
| SMC3_HUMAN | -0.10 | 1.10 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, hematocrit (hct), hemoglobin (hb), homa-ir, red blood cell count (rbc), serum creatinine, systolic blood pressure (sbp), transmission distortion