rs2374390 chr2:41932448 T>C
- Sequence
cagtcatggaaacattccccagac[T/C]gacactaatcgggggcacatctgg
- ASB in cell types
- K562 (myelogenous leukemia) HKC8 (kidney proximal tubule cell line)
- ASB for transcription factors
- NFIC_HUMAN EPAS1_HUMAN MTG16_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | 1.18 | n/a | 2.00 | n/a | No Hit | |||
| EPAS1_HUMAN | -1.66 | 2.18 | 1.00 | n/a | No Hit | |||
| MTG16_HUMAN | 0.85 | n/a | 2.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP abnormal involuntary movement scale, major depressive disorder (broad definition), major depressive disorder (broad definition) (females), major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), major depressive disorder (narrow definition) (males), microalbuminuria, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Skin_Not_Sun_Exposed_Suprapubic, Testis