rs2375670 chr2:137873470 C>T
- Sequence
ttttataggcagtagtgttctttg[C/T]tatttccctagtgcaaatagagct
- ASB in cell types
- LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma) LN95(Prostate adenocarcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.11 | 0.06 | 1.79 | 1.54 | Weak Discordant | |||
| ANDR_HUMAN | 1.47 | -0.23 | 2.00 | -0.19 | Weak Concordant |
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Motif analysis
