rs2380201 chr10:5852687 C>T
- Sequence
tgtttctagctttcccaggctgct[C/T]tgtgagagtcacagaaagggaagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) naive IgD+ B cells macrophages form periferal blood
- ASB for transcription factors
- IKZF1_HUMAN MEF2B_HUMAN PKNX1_HUMAN CDK9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.74 | -0.66 | 1.83 | n/a | n/a | |||
| MEF2B_HUMAN | 1.89 | -2.99 | 1.33 | n/a | No Hit | |||
| PKNX1_HUMAN | 2.13 | -3.73 | 1.50 | n/a | No Hit | |||
| CDK9_HUMAN | 1.89 | -0.89 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.57 | 0.58 | 1.05 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid