rs2380807 chr9:33604535 G>A
- Sequence
ggaattgccccatgtttctgtttg[G/A]gcaccactgaggaaggaagcatga
- ASB in cell types
- MS-1 (Small cell lung carcinoma) foreskin keratinocyte GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.82 | -0.56 | 1.57 | n/a | No Hit |
Items per page:
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Hippocampus, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Spleen, Testis