rs238196 chr20:49281680 G>A

Sequence
ctgaaattagaagcttaactgaat[G/A]atgcgagggaggattgaggaagat
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
HTF4_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HTF4_HUMAN n/a 2.67 1.005.8·10-3 1.00 n/a No Hit
ANDR_HUMAN -1.08 2.32 1.000.02 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP abnormal involuntary movement scale,  adiponectin levels,  barnes akathisia rating scale,  height,  salmonella-induced pyroptosis
GTEx eQTL Adipose_Subcutaneous,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Pancreas,  Thyroid,  Whole_Blood

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