rs2384463 chr2:26719388 A>G
- Sequence
catcatgtgtcatcctaacattgt[A/G]tccttgcctcagtagctcccctca
- ASB in cell types
- BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.77 | 1.64 | 1.00 | 4.52 | Concordant |
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Motif analysis
Genetic associations
GRASP age at death with kuru exposure, body mass index (bmi), diastolic blood pressure (dbp), ldl cholesterol, neuroblastoma (brain cancer), total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Substantia_nigra, Breast_Mammary_Tissue, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood